PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.004G028600.1
Common NamePHAVU_004G028600g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ZF-HD
Protein Properties Length: 344aa    MW: 37001.9 Da    PI: 7.648
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.004G028600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer103.91e-3266123359
         ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                          v+YkeClkNh aslGgha+DGCgEfmps+ ++  +++++kCaACgCHRnFHRre+ee
  Phvul.004G028600.1  66 VVVYKECLKNHVASLGGHALDGCGEFMPSPAATpDDPSSIKCAACGCHRNFHRREPEE 123
                         689***************************999999******************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047709.0E-2867121IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257743.0E-1769129IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.45269120IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.4E-2969120IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466892.24E-19187258IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-29188259IPR009057Homeodomain-like
TIGRFAMsTIGR015652.1E-26197254IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MEIITPTPPP TTVTATNAAA KSPELDIETP TRIHQAAGNS NPSPKPVSFS NGVLKRHHAN  60
HRAAAVVVYK ECLKNHVASL GGHALDGCGE FMPSPAATPD DPSSIKCAAC GCHRNFHRRE  120
PEEPPISPAT HHVLEYQPHH RHHPPPPPPH RSPNSSSPPP ISSYPSAPHM LLALSSGGGL  180
SVAPENTAAP AMAHHSRKRF RTKFSQEQKE KMHEFADKVG WKMQKRDENM VMEFCNEIGV  240
DRGVLKVWMH NNKNTLAKKD NLNGNSAIVS ANGINHVANV NKATVIRSNV NGLEHEHGAG  300
INGNTNNDHD HDHNHNLSSS HDVNEYENDS GTNGGGTNGS SSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A3e-211962551675ZF-HD homeobox family protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007151228.10.0hypothetical protein PHAVU_004G028600g
SwissprotQ9LXG01e-74ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLV7BZ750.0V7BZ75_PHAVU; Uncharacterized protein
STRINGGLYMA13G05420.11e-147(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19793188
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.12e-66homeobox protein 34